Package index • imongr

Configuration

Handling configuration

create_config() write_config() get_config() check_config(): Functions handling imongr R package config

Database

Basic database interaction

make_pool() drain_pool() insert_table() get_table() get_table_raw(): Low level database functions for imongr

Get data

Retrieve data from database

get_all_user_data() get_user_data() get_user_id() get_user_registries() get_user_registry_select() get_user_deliveries() get_registry_data() get_indicators_registry() get_registry_ind() get_registry_name() get_registry_short_name() get_registry_full_name() get_org_name() get_hospitals() get_hfs() get_rhfs() get_flat_org() get_all_orgnr() get_user() get_users() get_registry_indicators() get_dg_indicators() get_registry_medfield() get_medfield_registry() get_registry_user() get_user_registry() get_users_per_registry() get_aggdata_delivery() get_aggdata() get_review_collaborators() get_registry_projects() get_project_hospitals() get_ind_agg_data() get_ind_units() get_ind_limits(): Retreiv data from imongr database

Data operations

Specific data operations

delete_indicator_data() delete_agg_data() insert_data_verify() insert_data_prod() insert_agg_data() update_aggdata_delivery() agg_all_data() clean_agg_data() create_imongr_user() update_registry_medfield() update_registry_user() update_registry_user_role(): Functions for data operations in imongr

Aggregation

Prepare data for qmongr by aggregation

agg() agg_dg() agg_from_level(): Aggregate hospital data

Environment

Provides relevant settings

get_user_name() get_user_groups() db_host() db_name() db_username() db_password() adminer_url(): Get relevant settings either from config og environmental variables

Upload data

Processing and validation of upload data

check_report() mail_check_report() check_upload() check_missing_registry() check_mixing_ind() check_missing_var() check_invalid_var() check_invalid_context() check_invalid_org() check_invalid_ind() check_numeric_var() check_natural_var() check_overflow_var() check_numeric_denominator() check_natural_denominator() check_zero_denominator() check_duplicated_inds() check_values_exists() check_numeric_year() check_natural_year() csv_to_df() sample_df() indicator_is_fraction() filter_fraction_indicator(): Upload data to imongr

Tools

Miscellaneous functions

natural() md5_checksum() remove_empty_rows() user_widget() version_info() no_opt_out_ok() insert_sample_data() delete_all_data() invalidate_cache(): Tools and whatever

App server output

For use by the app server function

profile_ui() profile_server() profile_app(): Shiny module providing GUI and server logic for (user) profile

select_registry_ui() submit_ui() error_report_ui() warning_report_ui() upload_sample_text_ui() upload_sample_ui() var_doc_ui() medfield_summary_text_ui(): Functions that provide server output

App

Application server, user interface, modules and start-up

run_app(): Run the imongr Shiny Application

app_server(): Server logic for the imongr app

app_ui(): Client (ui) for the imongr app

indicator_ui() indicator_server() indicator_app(): Shiny module providing GUI and server logic for the indicator tab

publish_ui() publish_server() publish_app(): Shiny module providing GUI and server logic for the publish indicator tab

upload_ui() upload_server() upload_app(): Shiny module providing GUI and server logic for the upload data tab

download_ui() download_server() download_app(): Shiny module providing GUI and server logic for the download data tab

review_ui() get_last_year() update_graph_data() toggle_button() render_checkboxes() on_update_form() review_server() review_app(): Shiny module providing GUI and server logic for the expert group tab

add_arrows() status_ui() status_server() status_app(): Shiny module providing UI and server functions for registry status overview

project_ui() project_server(): Shiny module providing GUI and server logic for the indicator tab

selected_indicators_ui() selected_indicators_server(): Shiny module providing GUI and server logic for the selected indicators tab

Data

Package data, mosty for testing

data: Example data for qmongr data store

delivery: Delivery example data for qmongr data store

hf: Organization structure example data

hospital: Organization structure example data

ind: Indicator example data for qmongr data store

nation: Organization structure example data

org: Organization structure example data

orgnr: Organization structure example data

orgnr_shortname: Organization structure short_name example data

registry: Registry example data for qmongr data store

rhf: Organization structure example data

user: User example data for qmongr data store

user_registry: User_registry example data for qmongr data store

medfield: medfield example data for qmongr data store

registry_medfield: registry_medfield example data for qmongr data store

publish: publish example data for qmongr data store

To be added

New items yet to be structured…

.registry_status_data() registry_status_report(): Functions providing reports to be used in imongr

report_ui() report_server() report_app(): Shiny module providing GUI and server logic for reports

make_pool() drain_pool() insert_table() get_table() get_table_raw(): Low level database functions for imongr