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imongr

Primarily a tool to update data used by the mongts application.

Install

You can install the released version of imongr from GitHub with:

remotes::install_github("mong/imongr")

Development

The easiest way to develop imongr is to fire up the docker-compose.yml file:

docker-compose up

This file consist of seven different services: - three mariadb databases (prod at port 3331, verify at port 3332, and qa at port 3333) - Adminer, a tool for database management, at port 8888 - RStudio at port 8787 - Code-server (vscode) at port 8080 - The app, based on the hnskde/imongr:latest image, at port 3838

Open localhost:8787 with your favorite browser and login with rstudio and password. Go into the imongr folder, open imongr.Rproj, and press Yes to Do you want to open the project ~/imongr?. Start coding. If you prefer vscode, you can open localhost:8080 instead.

Populate the databases by using Adminer, either through imongr (Administrative verktøy - Adminer) or through port 8888 (the password is the same as username/db/repository name).

The data can be visualized by using the mongts app:

export DB_PORT=3331 # or 3332 for the verify database
yarn install && yarn dev # inside the mongts folder

The data can then be seen at localhost:3000/kvalitetsregistre/alle/sykehus/

Build docker image and run the container app locally 

R CMD build .
docker build -t hnskde/imongr:latest .
docker compose up

Navigate a browser to localhost:3838/.

Getting out of some dirty states

If the environment variables have been changed an you want to change them back to default:

readRenviron("~/.Renviron")

If your pool have not been closed properly, for instance if you have not cleaned up after testing with database:

  1. Go into Adminer on port 8888, and click on db in the breadcrumb.
  2. Click Refresh next to Database in the database table and delete all unwanted databases.
  3. Look at Process list and kill unwanted processes.
  4. Go into RStudio on port 8787 and restart R (Ctrl-Shift-F10).

Ethics

Please note that the ‘imongr’ project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.